STRINGSTRING
Psed_2422 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2422" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2422Hypothetical protein (177 aa)    
Predicted Functional Partners:
Psed_2423
Polyketide cyclase/dehydrase (149 aa)
 
          0.803
Psed_2424
FAD dependent oxidoreductase (532 aa)
              0.648
Psed_5594
ANTAR domain-containing protein (221 aa)
   
          0.612
Psed_6178
Hypothetical protein (202 aa)
   
          0.547
Psed_4661
Hypothetical protein (157 aa)
   
          0.503
Psed_3267
Glyoxalase/bleomycin resistance protein/dioxygenase (138 aa)
   
          0.475
Psed_3813
F420-dependent oxidoreductase (331 aa)
   
          0.471
Psed_3437
Hypothetical protein (65 aa)
   
          0.455
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (513 aa)
   
          0.426
Psed_5020
PHP domain-containing protein (340 aa)
   
          0.425
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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