STRINGSTRING
Psed_2438 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2438" - FAD dependent oxidoreductase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2438FAD dependent oxidoreductase (614 aa)    
Predicted Functional Partners:
Psed_3621
Hypothetical protein (378 aa)
   
          0.713
Psed_2150
NIPSNAP family containing protein (112 aa)
   
          0.693
Psed_1177
NIPSNAP family containing protein (107 aa)
   
          0.636
Psed_2437
CBS domain-containing protein (193 aa)
              0.613
Psed_2439
Peptidoglycan glycosyltransferase (717 aa)
              0.606
Psed_0666
Galactonate dehydratase (398 aa)
 
          0.568
Psed_2173
NIPSNAP family containing protein (108 aa)
   
          0.539
Psed_3726
Xylose isomerase domain-containing protein (303 aa)
   
          0.534
Psed_1487
Hypothetical protein (233 aa)
   
          0.532
Psed_1312
phytanoyl-CoA dioxygenase (261 aa)
   
          0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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