STRINGSTRING
Psed_2460 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2460" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2460Hypothetical protein (215 aa)    
Predicted Functional Partners:
Psed_2461
Hypothetical protein (44 aa)
              0.859
Psed_4591
Hypothetical protein (268 aa)
   
          0.653
Psed_2459
Transcriptional regulator CdaR (600 aa)
              0.651
Psed_0677
Hypothetical protein (177 aa)
   
          0.591
Psed_0549
Cysteine dioxygenase type I (175 aa)
   
          0.562
Psed_4589
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (256 aa)
   
          0.560
Psed_1673
TetR family transcriptional regulator (228 aa)
   
          0.522
Psed_2130
Transglutaminase domain-containing protein (230 aa)
   
          0.512
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (119 aa)
   
          0.504
Psed_4590
Succinate dehydrogenase (ubiquinone) (648 aa)
   
          0.475
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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