STRINGSTRING
Psed_2474 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2474" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2474TetR family transcriptional regulator (218 aa)    
Predicted Functional Partners:
Psed_0552
Hypothetical protein (232 aa)
   
          0.580
Psed_2473
Major facilitator superfamily protein (589 aa)
              0.567
Psed_2472
Cna B domain-containing protein (254 aa)
              0.564
Psed_5251
Hypothetical protein (217 aa)
   
          0.557
Psed_0257
Hypothetical protein (372 aa)
   
          0.552
Psed_0793
Short-chain dehydrogenase/reductase SDR (288 aa)
   
          0.532
Psed_0842
Hypothetical protein (144 aa)
   
          0.526
Psed_1059
Rieske (2Fe-2S) domain-containing protein (330 aa)
   
          0.498
Psed_1797
F420-dependent oxidoreductase (309 aa)
   
          0.487
Psed_2617
Hypothetical protein (71 aa)
   
          0.484
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]