STRINGSTRING
Psed_2488 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2488" - Ribonuclease H in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2488Ribonuclease H (210 aa)    
Predicted Functional Partners:
Psed_3588
DNA polymerase I (939 aa)
   
 
  0.728
Psed_6212
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (332 aa)
 
        0.725
Psed_2761
DNA polymerase III subunit epsilon (586 aa)
   
   
  0.706
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (526 aa)
   
   
  0.703
Psed_6654
Single-strand binding protein (175 aa)
   
 
  0.679
Psed_4808
Single-strand binding protein (185 aa)
   
 
  0.679
Psed_2487
LysR family transcriptional regulator (310 aa)
              0.646
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (634 aa)
 
     
  0.613
Psed_2932
NGG1p interacting factor 3 protein, NIF3 (383 aa)
   
        0.595
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (265 aa)
     
 
  0.572
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]