STRINGSTRING
Psed_2526 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2526" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2526Hypothetical protein (237 aa)    
Predicted Functional Partners:
Psed_2525
IclR family transcriptional regulator (264 aa)
              0.859
Psed_2527
Catechol 2,3 dioxygenase (304 aa)
              0.628
Psed_2524
2-oxopent-4-enoate hydratase (267 aa)
              0.609
Psed_2523
2-oxopent-4-enoate hydratase (252 aa)
              0.609
Psed_2522
4-oxalocrotonate tautomerase (67 aa)
              0.571
Psed_2521
Rieske (2Fe-2S) domain-containing protein (138 aa)
              0.571
Psed_2530
IclR family transcriptional regulator (282 aa)
              0.481
Psed_2529
Phosphoglycerate mutase (350 aa)
              0.481
Psed_2528
Catechol 2,3 dioxygenase (309 aa)
              0.481
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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