STRINGSTRING
Psed_2538 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2538" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2538Luciferase-like protein (369 aa)    
Predicted Functional Partners:
Psed_2540
o-succinylbenzoate--CoA ligase (513 aa)
   
   
  0.871
Psed_2539
3-oxoacyl-ACP reductase (277 aa)
   
        0.863
Psed_2541
phenylacetate--CoA ligase (453 aa)
         
  0.858
Psed_1470
Luciferase-like protein (337 aa)
   
          0.778
Psed_5207
F420-0-gamma-glutamyl ligase (454 aa)
 
   
  0.742
Psed_2238
F420-dependent oxidoreductase (275 aa)
 
          0.714
Psed_3906
Luciferase-like protein (426 aa)
 
          0.710
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.693
Psed_5839
NADPH-dependent FMN reductase (189 aa)
   
 
  0.667
Psed_2535
Peroxidase (402 aa)
   
        0.584
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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