STRINGSTRING
Psed_2555 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2555" - Carboxymuconolactone decarboxylase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2555Carboxymuconolactone decarboxylase (206 aa)    
Predicted Functional Partners:
Psed_6649
3-oxoadipate enol-lactonase (260 aa)
         
    0.900
Psed_6052
3-oxoadipate enol-lactonase (284 aa)
         
    0.900
Psed_2746
3-carboxy-cis,cis-muconate cycloisomerase (380 aa)
         
    0.900
Psed_2557
Hypothetical protein (308 aa)
              0.859
Psed_2556
3-oxoacyl-ACP reductase (266 aa)
              0.859
Psed_3560
Carboxymuconolactone decarboxylase (163 aa)
   
          0.760
Psed_2554
Xenobiotic-transporting ATPase (616 aa)
              0.504
Psed_1349
formyl-CoA transferase (810 aa)
   
          0.464
Psed_0378
Bifunctional deaminase-reductase domain-containing protein (211 aa)
   
          0.438
Psed_3561
Aromatic-ring-hydroxylating dioxygenase subunit beta (189 aa)
   
          0.433
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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