STRINGSTRING
Psed_2557 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2557" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2557Hypothetical protein (308 aa)    
Predicted Functional Partners:
Psed_2556
3-oxoacyl-ACP reductase (266 aa)
              0.864
Psed_2555
Carboxymuconolactone decarboxylase (206 aa)
              0.859
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
 
   
  0.664
Psed_3035
3-oxoacid CoA-transferase subunit A (482 aa)
         
  0.574
Psed_2741
3-oxoacid CoA-transferase subunit B (208 aa)
 
          0.507
Psed_2554
Xenobiotic-transporting ATPase (616 aa)
              0.505
Psed_0777
3-oxoacid CoA-transferase subunit B (221 aa)
 
          0.499
Psed_5281
Acyl dehydratase MaoC (147 aa)
 
          0.485
Psed_1710
3-hydroxyacyl-CoA dehydrogenase (594 aa)
   
   
  0.450
Psed_5188
Hypothetical protein (430 aa)
   
          0.445
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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