STRINGSTRING
Psed_2600 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2600" - ABC transporter permease in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2600ABC transporter permease (287 aa)    
Predicted Functional Partners:
Psed_2601
ABC transporter permease (373 aa)
   
    0.994
Psed_2602
Monosaccharide-transporting ATPase (276 aa)
   
    0.994
Psed_2603
Fe(3+)-transporting ATPase (234 aa)
   
    0.993
Psed_2570
Phosphonate-transporting ATPase (626 aa)
   
    0.964
Psed_3731
Phosphonate-transporting ATPase (254 aa)
   
    0.963
Psed_3879
Fe(3+)-transporting ATPase (237 aa)
   
    0.963
Psed_2066
Monosaccharide-transporting ATPase (256 aa)
   
    0.959
Psed_2571
ABC transporter (241 aa)
 
   
    0.958
Psed_0514
ABC transporter (239 aa)
 
   
    0.958
Psed_3732
Monosaccharide-transporting ATPase (251 aa)
   
    0.958
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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