STRINGSTRING
Psed_2611 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2611" - ATPase AAA in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2611ATPase AAA (743 aa)    
Predicted Functional Partners:
Psed_2610
FAD dependent oxidoreductase (465 aa)
 
          0.903
Psed_1724
Hypothetical protein (439 aa)
   
          0.673
Psed_2612
Hypothetical protein (562 aa)
              0.660
Psed_5081
DoxX family protein (142 aa)
   
          0.617
Psed_2377
GAF domain-containing protein (227 aa)
   
          0.607
Psed_1408
Sulfatase (539 aa)
   
          0.603
Psed_1403
CDP-alcohol phosphatidyltransferase (252 aa)
   
          0.575
Psed_3790
Luciferase-like protein (474 aa)
   
          0.565
Psed_5168
Hypothetical protein (197 aa)
   
          0.557
Psed_3940
Hypothetical protein (331 aa)
   
          0.524
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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