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Psed_2631 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2631" - DNA topoisomerase IB in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2631DNA topoisomerase IB (359 aa)    
Predicted Functional Partners:
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (839 aa)
     
 
  0.880
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (660 aa)
     
 
  0.880
Psed_4989
DNA ligase D (683 aa)
 
 
  0.725
Psed_2630
Xenobiotic-transporting ATPase (600 aa)
   
      0.722
Psed_0328
ATP dependent DNA ligase (310 aa)
 
 
  0.709
Psed_0303
DNA polymerase LigD, polymerase domain-containing protein (325 aa)
 
          0.679
Psed_6303
ATP-dependent DNA ligase (118 aa)
 
 
  0.662
Psed_3272
DNA polymerase LigD, polymerase domain-containing protein (661 aa)
 
 
  0.657
Psed_3150
ATP-dependent DNA helicase RecQ (606 aa)
   
 
  0.654
Psed_1993
ATP-dependent DNA helicase RecQ (701 aa)
   
 
  0.654
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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