STRINGSTRING
Psed_2645 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2645" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2645Hypothetical protein (316 aa)    
Predicted Functional Partners:
Psed_4269
Ion transport 2 domain-containing protein (163 aa)
   
          0.740
Psed_1137
Ion transport 2 domain-containing protein (185 aa)
   
          0.733
Psed_5168
Hypothetical protein (197 aa)
   
          0.683
Psed_3414
Hypothetical protein (264 aa)
   
          0.625
Psed_4284
Extradiol ring-cleavage dioxygenase class III protein subunit B (357 aa)
   
          0.619
Psed_0241
Hypothetical protein (121 aa)
   
          0.596
Psed_3897
TetR family transcriptional regulator (213 aa)
   
          0.586
Psed_2095
Hypothetical protein (206 aa)
   
          0.578
Psed_1551
Hypothetical protein (200 aa)
   
          0.570
Psed_3746
IclR family transcriptional regulator (251 aa)
   
          0.568
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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