STRINGSTRING
Psed_2663 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2663" - Peptidase M24 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2663Peptidase M24 (237 aa)    
Predicted Functional Partners:
Psed_2664
Haloacid dehalogenase (229 aa)
              0.734
Psed_6446
Alpha/beta hydrolase (283 aa)
   
          0.636
Psed_2662
Major facilitator superfamily protein (529 aa)
              0.587
Psed_0576
Hypothetical protein (202 aa)
   
          0.547
Psed_0570
Ricin B lectin (134 aa)
   
          0.538
Psed_6659
Hypothetical protein (132 aa)
   
          0.494
Psed_1339
NAD-dependent epimerase/dehydratase (311 aa)
   
          0.474
Psed_0552
Hypothetical protein (232 aa)
   
          0.452
Psed_2661
EmrB/QacA subfamily drug resistance transporter (532 aa)
              0.433
Psed_0223
NAD-dependent epimerase/dehydratase (298 aa)
   
          0.431
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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