STRINGSTRING
Psed_2780 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2780" - Transcriptional regulatory protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2780Transcriptional regulatory protein (121 aa)    
Predicted Functional Partners:
Psed_2779
Serine/threonine protein kinase with PASTA sensor(s) (585 aa)
         
  0.756
Psed_5216
Hypothetical protein (238 aa)
   
        0.579
Psed_5822
G-D-S-L family lipolytic protein (266 aa)
   
          0.566
Psed_4598
Hypothetical protein (64 aa)
   
          0.543
Psed_5143
Peptidase S24/S26A/S26B, conserved region (109 aa)
   
          0.539
Psed_4573
RDD domain-containing protein (157 aa)
   
          0.516
Psed_0953
PhoH family protein (451 aa)
   
        0.498
Psed_5210
3-methyl-adenine DNA glycosylase (305 aa)
   
          0.494
Psed_2841
Hypothetical protein (206 aa)
   
        0.485
Psed_5726
Hypothetical protein (306 aa)
   
          0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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