STRINGSTRING
Psed_2794 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2794" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2794Hypothetical protein (129 aa)    
Predicted Functional Partners:
Psed_3387
Transcriptional regulator (69 aa)
   
          0.691
Psed_0102
Hypothetical protein (72 aa)
   
          0.664
Psed_1086
Hypothetical protein (250 aa)
   
          0.662
Psed_3426
Hypothetical protein (305 aa)
   
          0.639
Psed_1116
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (125 aa)
   
          0.623
Psed_6674
Hypothetical protein (784 aa)
   
          0.593
Psed_4766
Large Ala/Glu-rich protein (254 aa)
   
        0.569
Psed_2793
Type 12 methyltransferase (235 aa)
 
          0.567
Psed_2786
Hypothetical protein (230 aa)
 
          0.557
Psed_2765
Group 1 glycosyl transferase (387 aa)
   
        0.556
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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