STRINGSTRING
Psed_2796 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2796" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2796Hypothetical protein (432 aa)    
Predicted Functional Partners:
Psed_2795
Transglutaminase domain-containing protein (832 aa)
 
          0.966
Psed_2797
ATPase (341 aa)
 
          0.950
Psed_5116
Hypothetical protein (56 aa)
   
          0.612
Psed_0895
Hypothetical protein (145 aa)
   
          0.606
Psed_6121
Hypothetical protein (457 aa)
   
          0.600
Psed_0315
Hypothetical protein (262 aa)
   
          0.555
Psed_0990
ABC transporter integral membrane protein (283 aa)
   
          0.521
Psed_0411
ATPase (330 aa)
 
          0.493
Psed_0165
Hypothetical protein (294 aa)
   
          0.487
Psed_3374
ATPase (358 aa)
 
          0.483
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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