STRINGSTRING
Psed_2797 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2797" - ATPase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2797ATPase (341 aa)    
Predicted Functional Partners:
Psed_2795
Transglutaminase domain-containing protein (832 aa)
 
     
  0.982
Psed_2796
Hypothetical protein (432 aa)
 
          0.950
Psed_0412
Hypothetical protein (296 aa)
 
   
  0.810
Psed_3373
Hypothetical protein (325 aa)
 
   
  0.719
Psed_0413
Von Willebrand factor A (332 aa)
 
        0.626
Psed_3483
Molecular chaperone DnaJ (331 aa)
         
  0.590
Psed_0414
Von Willebrand factor A (362 aa)
 
        0.561
Psed_3372
Von Willebrand factor A (327 aa)
 
        0.516
Psed_6136
Von Willebrand factor A (405 aa)
              0.412
Psed_5738
Von Willebrand factor A (382 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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