STRINGSTRING
Psed_2823 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2823" - Abortive infection protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2823Abortive infection protein (244 aa)    
Predicted Functional Partners:
Psed_4588
Hypothetical protein (117 aa)
   
        0.746
Psed_2824
Hypothetical protein (392 aa)
 
          0.720
Psed_2296
Hypothetical protein (155 aa)
   
          0.706
Psed_4620
Phage shock protein A, PspA (272 aa)
   
        0.686
Psed_0947
Hypothetical protein (203 aa)
   
          0.660
Psed_4065
Peptidase M28 (748 aa)
 
          0.649
Psed_2612
Hypothetical protein (562 aa)
 
          0.624
Psed_2841
Hypothetical protein (206 aa)
   
          0.611
Psed_6671
Major facilitator superfamily protein (452 aa)
 
        0.556
Psed_2963
acetyl-CoA carboxylase (494 aa)
              0.546
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]