STRINGSTRING
Psed_2824 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2824" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2824Hypothetical protein (392 aa)    
Predicted Functional Partners:
Psed_2823
Abortive infection protein (244 aa)
 
          0.720
Psed_2047
Hypothetical protein (330 aa)
   
          0.673
Psed_4390
Hypothetical protein (371 aa)
   
          0.613
Psed_2092
Haloacid dehalogenase (320 aa)
   
          0.599
Psed_2825
Sodium/hydrogen exchanger (505 aa)
              0.593
Psed_3856
Hypothetical protein (343 aa)
   
          0.556
Psed_1764
PucR family transcriptional regulator (504 aa)
   
          0.489
Psed_0054
Zinc/iron permease (278 aa)
   
          0.483
Psed_0888
Transposase IS4 family protein (466 aa)
   
          0.478
Psed_5531
DNA translocase FtsK (497 aa)
   
          0.470
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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