STRINGSTRING
Psed_2881 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2881" - F420-dependent protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2881F420-dependent protein (154 aa)    
Predicted Functional Partners:
Psed_2883
Phosphoglycerate mutase (209 aa)
              0.651
Psed_2882
Histidine triad (HIT) protein (142 aa)
              0.651
Psed_0121
Hypothetical protein (207 aa)
   
          0.594
Psed_3885
Hypothetical protein (820 aa)
   
          0.571
Psed_1583
F420-dependent protein (130 aa)
   
          0.561
Psed_0668
Hypothetical protein (94 aa)
   
          0.547
Psed_4570
F420-dependent oxidoreductase (311 aa)
   
          0.531
Psed_4433
Luciferase-like protein (303 aa)
   
          0.506
Psed_0545
Cna B domain-containing protein (1071 aa)
   
          0.505
Psed_3989
Hypothetical protein (246 aa)
   
          0.501
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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