STRINGSTRING
Psed_2891 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2891" - 3'-5' exonuclease in Pseudonocardia dioxanivorans
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_28913’-5’ exonuclease (394 aa)    
Predicted Functional Partners:
Psed_3285
DEAD/DEAH box helicase domain-containing protein (924 aa)
   
  0.988
Psed_3973
Ribonuclease II (474 aa)
   
  0.986
Psed_3143
DEAD/DEAH box helicase domain-containing protein (840 aa)
 
  0.986
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (251 aa)
   
  0.985
Psed_5599
ATP-dependent helicase HrpB (810 aa)
 
  0.941
Psed_0553
ATP-dependent helicase HrpA (1413 aa)
 
  0.911
Psed_3872
RNA binding S1 domain-containing protein (487 aa)
 
    0.905
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (308 aa)
 
 
    0.841
rpmD
50S ribosomal protein L30 (68 aa)
   
    0.830
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (211 aa)
 
 
    0.830
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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