STRINGSTRING
Psed_2893 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2893" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2893Hypothetical protein (197 aa)    
Predicted Functional Partners:
Psed_2896
Chlorite dismutase (231 aa)
 
          0.905
Psed_3929
Hypothetical protein (332 aa)
   
        0.761
Psed_2891
3’-5’ exonuclease (394 aa)
 
          0.755
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (356 aa)
   
        0.725
Psed_2895
Protoporphyrinogen oxidase (484 aa)
              0.719
Psed_2012
DNA polymerase III subunit delta (342 aa)
 
        0.716
Psed_5204
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (111 aa)
   
          0.685
Psed_2132
Hypothetical protein (162 aa)
   
          0.651
Psed_0004
Hypothetical protein (198 aa)
   
          0.636
Psed_2756
Cytochrome c class I (286 aa)
   
          0.634
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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