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Psed_2901 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2901" - DNA polymerase LigD, polymerase domain-containing protein in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2901DNA polymerase LigD, polymerase domain-containing protein (346 aa)    
Predicted Functional Partners:
Psed_0328
ATP dependent DNA ligase (310 aa)
 
 
  0.982
Psed_4718
ATP dependent DNA ligase (356 aa)
 
  0.946
Psed_3144
Histidine kinase (602 aa)
 
 
  0.911
Psed_6303
ATP-dependent DNA ligase (118 aa)
 
 
  0.909
Psed_2054
DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (336 aa)
 
   
  0.892
Psed_0327
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (330 aa)
 
   
  0.892
lig
DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (513 aa)
 
 
  0.891
Psed_3272
DNA polymerase LigD, polymerase domain-containing protein (661 aa)
 
 
 
0.664
Psed_4989
DNA ligase D (683 aa)
 
 
 
0.660
Psed_2900
Hypothetical protein (103 aa)
              0.643
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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