STRINGSTRING
Psed_2932 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2932" - NGG1p interacting factor 3 protein, NIF3 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2932NGG1p interacting factor 3 protein, NIF3 (383 aa)    
Predicted Functional Partners:
Psed_2933
Hypothetical protein (246 aa)
   
   
  0.941
Psed_2934
Phosphoglycerate mutase (228 aa)
              0.887
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
     
 
  0.651
Psed_2978
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (348 aa)
     
 
  0.651
Psed_6243
Phosphoribulokinase/uridine kinase (315 aa)
   
      0.649
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination (246 aa)
 
          0.642
Psed_2721
Hypothetical protein (326 aa)
   
        0.624
Psed_2488
Ribonuclease H (210 aa)
   
        0.595
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (634 aa)
   
        0.584
Psed_2929
Protein tyrosine phosphatase (166 aa)
   
        0.581
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]