STRINGSTRING
Psed_2965 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2965" - Creatininase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2965Creatininase (263 aa)    
Predicted Functional Partners:
Psed_5383
Cytosine deaminase (427 aa)
       
    0.912
Psed_2964
Amidase (490 aa)
              0.863
Psed_5222
Creatininase (235 aa)
   
   
 
0.856
Psed_5679
Creatininase (241 aa)
   
   
 
0.852
Psed_5682
Hypothetical protein (102 aa)
 
        0.564
Psed_2963
acetyl-CoA carboxylase (494 aa)
              0.507
Psed_5681
Radical SAM domain-containing protein (410 aa)
 
        0.490
Psed_2966
Rieske (2Fe-2S) domain-containing protein (361 aa)
              0.478
Psed_5677
Family 2 glycosyl transferase (504 aa)
 
          0.445
Psed_2968
ferredoxin--NAD(+) reductase (397 aa)
         
  0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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