STRINGSTRING
Psed_2986 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2986" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2986Hypothetical protein (106 aa)    
Predicted Functional Partners:
Psed_6662
Hypothetical protein (180 aa)
   
        0.776
Psed_2776
Hypothetical protein; Exonuclease that cleaves single-stranded 3’ overhangs of double-stranded RNA (162 aa)
   
          0.774
Psed_0964
Hypothetical protein (216 aa)
   
        0.771
Psed_4620
Phage shock protein A, PspA (272 aa)
   
          0.771
Psed_5212
Glycosyltransferase (251 aa)
   
          0.770
Psed_1862
Hypothetical protein (177 aa)
   
          0.769
Psed_4678
Hypothetical protein (156 aa)
   
          0.764
Psed_5295
Hypothetical protein (440 aa)
   
          0.761
Psed_3053
Hypothetical protein (219 aa)
   
          0.759
Psed_0162
Hypothetical protein (147 aa)
   
          0.758
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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