STRINGSTRING
Psed_2989 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_2989" - Poly(3-hydroxyalkanoate) depolymerase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_2989Poly(3-hydroxyalkanoate) depolymerase (287 aa)    
Predicted Functional Partners:
Psed_2990
Poly-beta-hydroxybutyrate polymerase domain-containing protein (459 aa)
 
          0.957
Psed_1356
Alpha/beta hydrolase (299 aa)
   
        0.766
Psed_6146
Alpha/beta hydrolase (275 aa)
   
     
  0.745
Psed_0344
Alpha/beta hydrolase (253 aa)
   
     
  0.725
Psed_2979
Poly-beta-hydroxybutyrate polymerase domain-containing protein (591 aa)
 
   
  0.718
Psed_3753
Alpha/beta hydrolase (258 aa)
   
     
  0.714
Psed_4327
Alpha/beta hydrolase (286 aa)
   
          0.685
Psed_1078
Alpha/beta hydrolase (300 aa)
   
     
  0.660
Psed_5284
Alpha/beta hydrolase (272 aa)
   
     
  0.658
Psed_1095
Alpha/beta hydrolase (259 aa)
   
          0.630
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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