STRINGSTRING
Psed_3002 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3002" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3002TetR family transcriptional regulator (141 aa)    
Predicted Functional Partners:
Psed_6574
Tetracycline repressor (204 aa)
   
          0.699
Psed_6570
ABC transporter (255 aa)
   
          0.684
Psed_3661
Hypothetical protein (104 aa)
   
          0.671
Psed_5987
Hypothetical protein (157 aa)
   
          0.667
Psed_1393
TetR family transcriptional regulator (225 aa)
   
          0.648
Psed_4261
Hypothetical protein (139 aa)
   
          0.615
Psed_0841
Hypothetical protein (121 aa)
   
          0.598
Psed_4277
Hypothetical protein (460 aa)
   
          0.556
Psed_0321
TetR family transcriptional regulator (251 aa)
   
          0.554
Psed_0357
Helix-turn-helix domain-containing protein (298 aa)
   
          0.550
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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