STRINGSTRING
Psed_3010 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3010" - Acyltransferase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3010Acyltransferase (404 aa)    
Predicted Functional Partners:
Psed_4897
Hypothetical protein (154 aa)
   
          0.552
Psed_1007
Hypothetical protein (297 aa)
   
          0.543
Psed_1056
Hypothetical protein (279 aa)
   
          0.509
Psed_1952
Hypothetical protein (146 aa)
   
          0.507
Psed_4002
Major facilitator superfamily protein (866 aa)
   
          0.464
Psed_0589
Hypothetical protein (266 aa)
   
          0.456
Psed_0184
Hypothetical protein (701 aa)
   
          0.455
Psed_0744
Ferric reductase (180 aa)
   
          0.448
Psed_6459
Major facilitator superfamily protein (471 aa)
 
          0.416
Psed_0361
Hypothetical protein (405 aa)
   
          0.414
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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