STRINGSTRING
Psed_3013 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3013" - ABC transporter permease in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3013ABC transporter permease (280 aa)    
Predicted Functional Partners:
Psed_3014
Taurine-transporting AtPase (256 aa)
   
  0.983
Psed_3012
Hypothetical protein (343 aa)
 
   
  0.983
Psed_3015
Hypothetical protein (73 aa)
              0.859
Psed_5045
Taurine-transporting AtPase (285 aa)
   
  0.856
Psed_4191
Taurine-transporting AtPase (276 aa)
   
  0.856
Psed_4511
Taurine-transporting AtPase (266 aa)
   
  0.849
Psed_5964
Taurine-transporting AtPase (263 aa)
   
  0.847
Psed_5965
ABC transporter permease (325 aa)
   
        0.781
Psed_6265
ABC transporter permease (270 aa)
 
          0.776
Psed_4512
ABC transporter permease (300 aa)
   
          0.767
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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