STRINGSTRING
Psed_3062 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3062" - TrkA-N domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3062TrkA-N domain-containing protein (218 aa)    
Predicted Functional Partners:
Psed_3063
TrkA-N domain-containing protein (220 aa)
       
0.965
Psed_3064
Hypothetical protein (686 aa)
 
     
  0.905
Psed_3065
Deoxyribonuclease/rho motif-related TRAM (398 aa)
   
        0.775
Psed_3060
OB-fold tRNA/helicase-type nucleic acid binding-protein (125 aa)
 
          0.753
Psed_0525
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (761 aa)
         
  0.625
Psed_3066
Hypothetical protein (302 aa)
              0.576
pheT
Phenylalanyl-tRNA synthetase subunit beta (846 aa)
              0.568
Psed_3432
Fmu (Sun) domain-containing protein (482 aa)
   
        0.553
Psed_5351
Inosine-5’-monophosphate dehydrogenase (501 aa)
         
  0.490
Psed_0954
IMP dehydrogenase (483 aa)
         
  0.490
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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