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Psed_3065 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3065" - Deoxyribonuclease/rho motif-related TRAM in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3065Deoxyribonuclease/rho motif-related TRAM (398 aa)    
Predicted Functional Partners:
Psed_3064
Hypothetical protein (686 aa)
 
        0.931
Psed_0938
Cystathionine beta-synthase (456 aa)
   
      0.798
Psed_3063
TrkA-N domain-containing protein (220 aa)
   
        0.775
Psed_3062
TrkA-N domain-containing protein (218 aa)
   
        0.775
Psed_3066
Hypothetical protein (302 aa)
              0.771
Psed_3099
Cysteine synthase (463 aa)
   
      0.752
Psed_1511
Cysteine synthase (316 aa)
   
      0.752
Psed_3432
Fmu (Sun) domain-containing protein (482 aa)
 
 
  0.741
Psed_4039
Cysteine synthase (373 aa)
   
      0.690
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (263 aa)
   
   
  0.669
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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