STRINGSTRING
Psed_3066 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3066" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3066Hypothetical protein (302 aa)    
Predicted Functional Partners:
Psed_4112
butyryl-CoA dehydrogenase (383 aa)
 
        0.829
Psed_4111
formyl-CoA transferase (394 aa)
 
        0.809
Psed_1576
butyryl-CoA dehydrogenase (388 aa)
 
        0.809
Psed_4214
formyl-CoA transferase (382 aa)
 
        0.788
Psed_1966
formyl-CoA transferase (401 aa)
 
        0.773
Psed_3065
Deoxyribonuclease/rho motif-related TRAM (398 aa)
              0.771
Psed_3064
Hypothetical protein (686 aa)
              0.771
Psed_1809
formyl-CoA transferase (397 aa)
 
        0.729
Psed_1949
L-carnitine dehydratase/bile acid-inducible protein F (399 aa)
 
   
  0.634
Psed_4202
HpcH/HpaI aldolase (285 aa)
 
        0.613
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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