STRINGSTRING
Psed_3067 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3067" - Tex-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3067Tex-like protein (831 aa)    
Predicted Functional Partners:
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination (327 aa)
     
 
  0.815
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.756
Psed_2293
Molecular chaperone DnaJ (130 aa)
   
  0.661
Psed_3990
Beta-lactamase domain-containing protein (372 aa)
     
      0.619
Psed_0431
Beta-lactamase domain-containing protein (234 aa)
     
      0.616
Psed_3066
Hypothetical protein (302 aa)
              0.604
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (750 aa)
     
 
  0.590
Psed_3065
Deoxyribonuclease/rho motif-related TRAM (398 aa)
   
        0.590
Psed_2891
3’-5’ exonuclease (394 aa)
     
 
  0.573
Psed_3064
Hypothetical protein (686 aa)
              0.547
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (11%) [HD]