STRINGSTRING
Psed_3080 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3080" - Transposase IS4 family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3080Transposase IS4 family protein (297 aa)    
Predicted Functional Partners:
Psed_3048
AmiS/UreI transporter (212 aa)
   
          0.584
Psed_0245
Hypothetical protein (164 aa)
   
          0.570
Psed_6309
Hypothetical protein (303 aa)
   
          0.506
Psed_1260
DEAD/DEAH box helicase domain-containing protein (1170 aa)
   
          0.490
Psed_6271
Hypothetical protein (377 aa)
   
          0.456
Psed_2941
MarR family transcriptional regulator (199 aa)
   
          0.437
Psed_5884
Hypothetical protein (287 aa)
   
          0.410
Psed_1211
Transposase IS111A/IS1328/IS1533 (403 aa)
 
          0.407
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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