STRINGSTRING
Psed_3127 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3127" - Ribonuclease BN in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3127Ribonuclease BN (409 aa)    
Predicted Functional Partners:
Psed_5649
Major facilitator superfamily protein (662 aa)
 
     
  0.769
Psed_0964
Hypothetical protein (216 aa)
   
          0.747
Psed_3053
Hypothetical protein (219 aa)
   
          0.727
Psed_6674
Hypothetical protein (784 aa)
   
          0.711
Psed_2769
Cyclase (144 aa)
   
          0.697
Psed_2767
Hypothetical protein (193 aa)
   
          0.695
Psed_1019
DivIVA domain-containing protein (312 aa)
   
        0.686
Psed_1070
Hypothetical protein (219 aa)
   
        0.664
Psed_0454
Hypothetical protein (99 aa)
   
          0.652
Psed_0966
Hypothetical protein (217 aa)
   
          0.646
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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