STRINGSTRING
Psed_3138 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3138" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3138Hypothetical protein (195 aa)    
Predicted Functional Partners:
Psed_5727
Hypothetical protein (198 aa)
 
          0.827
Psed_5725
Roadblock/LC7 family protein (140 aa)
 
          0.804
Psed_5724
Histidine kinase (1778 aa)
 
          0.791
Psed_4053
Hypothetical protein (595 aa)
   
          0.778
Psed_4584
Hypothetical protein (235 aa)
   
          0.735
Psed_3661
Hypothetical protein (104 aa)
   
          0.722
Psed_3139
isovaleryl-CoA dehydrogenase (413 aa)
              0.709
Psed_3660
Helix-turn-helix domain-containing protein (296 aa)
   
          0.698
Psed_2348
Hypothetical protein (385 aa)
   
          0.669
Psed_2038
Sporulation and cell division protein SsgA (139 aa)
   
          0.662
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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