STRINGSTRING
Psed_3140 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3140" - ArsR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3140ArsR family transcriptional regulator (201 aa)    
Predicted Functional Partners:
Psed_3141
Hypothetical protein (149 aa)
              0.854
Psed_1976
Lysyl oxidase-like protein (317 aa)
   
          0.706
Psed_1446
Hypothetical protein (159 aa)
   
          0.649
Psed_4444
Alpha/beta hydrolase (263 aa)
   
          0.624
Psed_4496
Hypothetical protein (375 aa)
   
          0.622
Psed_4380
TrwC relaxase (1457 aa)
   
          0.612
Psed_0976
TetR family transcriptional regulator (209 aa)
   
          0.589
Psed_3139
isovaleryl-CoA dehydrogenase (413 aa)
              0.583
Psed_4688
Polysaccharide deacetylase (372 aa)
   
          0.573
Psed_4499
Lipase class 2 (265 aa)
   
          0.564
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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