STRINGSTRING
Psed_3154 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3154" - SARP family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3154SARP family transcriptional regulator (285 aa)    
Predicted Functional Partners:
Psed_3155
ATP-binding protein (316 aa)
 
          0.634
Psed_3091
Transcriptional activator domain-containing protein (850 aa)
   
          0.564
Psed_2014
Alpha/beta hydrolase (251 aa)
   
          0.537
Psed_2172
Haloacid dehalogenase (208 aa)
   
          0.502
Psed_1869
Polysaccharide biosynthesis protein CelD (353 aa)
   
          0.501
Psed_3156
Sulfate transporter/antisigma-factor antagonist STAS (335 aa)
              0.499
Psed_1586
Hypothetical protein (933 aa)
   
          0.495
Psed_3489
Hypothetical protein (142 aa)
   
          0.468
Psed_4444
Alpha/beta hydrolase (263 aa)
   
          0.452
Psed_1997
Activator of Hsp90 ATPase 1 family protein (100 aa)
   
          0.436
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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