STRINGSTRING
Psed_3158 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3158" - OsmC family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3158OsmC family protein (172 aa)    
Predicted Functional Partners:
Psed_3157
Benzoylformate decarboxylase (524 aa)
              0.860
Psed_2173
NIPSNAP family containing protein (108 aa)
   
          0.726
Psed_1177
NIPSNAP family containing protein (107 aa)
   
          0.710
Psed_2150
NIPSNAP family containing protein (112 aa)
   
          0.677
Psed_3159
CDP-alcohol phosphatidyltransferase (224 aa)
              0.648
Psed_3156
Sulfate transporter/antisigma-factor antagonist STAS (335 aa)
              0.482
Psed_3155
ATP-binding protein (316 aa)
              0.482
Psed_0881
Hypothetical protein (89 aa)
   
          0.469
Psed_0058
Hypothetical protein (258 aa)
   
          0.468
Psed_2979
Poly-beta-hydroxybutyrate polymerase domain-containing protein (591 aa)
   
          0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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