STRINGSTRING
Psed_3168 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3168" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3168Hypothetical protein (375 aa)    
Predicted Functional Partners:
Psed_0947
Hypothetical protein (203 aa)
   
          0.601
Psed_4295
Hypothetical protein (266 aa)
   
          0.579
Psed_5496
MerR family transcriptional regulator (116 aa)
   
          0.520
Psed_0323
ABC transporter (265 aa)
   
          0.518
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
   
          0.515
Psed_3167
Hypothetical protein (444 aa)
              0.503
Psed_3166
Hypothetical protein (350 aa)
              0.503
Psed_3414
Hypothetical protein (264 aa)
   
          0.488
Psed_5928
Hypothetical protein (164 aa)
   
          0.480
Psed_2318
Regulatory protein MerR (178 aa)
   
          0.470
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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