STRINGSTRING
Psed_3176 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3176" - HxlR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3176HxlR family transcriptional regulator (131 aa)    
Predicted Functional Partners:
Psed_5975
HxlR family transcriptional regulator (192 aa)
   
          0.778
Psed_4223
HxlR family transcriptional regulator (159 aa)
   
          0.778
Psed_0680
HxlR family transcriptional regulator (146 aa)
   
          0.778
Psed_3796
HxlR family transcriptional regulator (269 aa)
   
          0.769
Psed_4945
HxlR family transcriptional regulator (186 aa)
   
          0.765
Psed_3175
Hypothetical protein (250 aa)
              0.617
Psed_3174
Hypothetical protein (219 aa)
              0.445
Psed_3214
NmrA family protein (293 aa)
   
        0.424
Psed_2962
Hypothetical protein (276 aa)
   
        0.424
Psed_0237
NmrA family protein (302 aa)
   
        0.424
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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