STRINGSTRING
Psed_3183 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3183" - UspA domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3183UspA domain-containing protein (281 aa)    
Predicted Functional Partners:
Psed_3182
Hypothetical protein (52 aa)
              0.859
Psed_0709
UspA domain-containing protein (283 aa)
   
          0.777
Psed_0705
UspA domain-containing protein (294 aa)
   
          0.752
Psed_2142
Hypothetical protein (144 aa)
   
          0.708
Psed_3181
Hypothetical protein (140 aa)
              0.692
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (92 aa)
   
          0.616
Psed_4736
Hypothetical protein (107 aa)
   
          0.594
Psed_5153
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (83 aa)
   
          0.537
Psed_0439
Hypothetical protein (110 aa)
   
          0.533
Psed_5186
NUDIX hydrolase (161 aa)
   
          0.510
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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