STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3186PFAM: Isochorismatase-like; KEGG: cai:Caci_6450 isochorismatase hydrolase. (235 aa)    
Predicted Functional Partners:
Psed_3184
TIGRFAM: Allophanate hydrolase; KEGG: sma:SAV_6697 allophanate hydrolase; PFAM: Amidase.
  
  0.996
Psed_1194
KEGG: met:M446_3691 allophanate hydrolase; PFAM: Amidase.
  
  0.990
Psed_3185
KEGG: ccs:CCNA_02697 hypothetical protein.
 
    0.909
Psed_1193
PFAM: Isochorismatase-like; KEGG: cms:CMS_2996 putative isochorismatase hydrolase.
  
  
 
0.901
Psed_3188
Ring-opening amidohydrolase; Responsible for the hydrolysis of cyanuric acid, an intermediate formed during catabolism of s-triazine based compounds in herbicides such as atrazine and polymers such as melamine. Catalyzes the hydrolytic opening of the s-triazine ring of cyanuric acid (2,4,6- trihydroxy-s-triazine) to yield carbon dioxide and carboxybiuret, which spontaneously decarboxylates to biuret.
 
   
 0.854
Psed_3187
KEGG: fal:FRAAL6172 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
       0.779
Psed_3189
Hypothetical protein; KEGG: ske:Sked_01070 monosaccharide-binding protein.
       0.650
Psed_1191
PFAM: Xanthine/uracil/vitamin C permease; KEGG: cai:Caci_6447 xanthine/uracil/vitamin C permease.
 
     0.634
Psed_4984
PFAM: Isochorismatase-like; KEGG: msp:Mspyr1_17060 nicotinamidase-like amidase.
  
     0.588
Psed_4173
PFAM: Isochorismatase-like; KEGG: cag:Cagg_3089 N-carbamoylsarcosine amidase.
  
     0.551
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.