STRINGSTRING
Psed_3215 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3215" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3215TetR family transcriptional regulator (185 aa)    
Predicted Functional Partners:
Psed_3214
NmrA family protein (293 aa)
 
          0.685
Psed_4582
Acriflavin resistance protein (1275 aa)
         
  0.498
Psed_2432
Helix-turn-helix domain-containing protein (285 aa)
 
 
 
  0.466
Psed_5971
Hypothetical protein (301 aa)
   
     
  0.457
Psed_4049
Coenzyme F420-dependent NADP oxidoreductase (254 aa)
 
          0.453
Psed_3455
Hypothetical protein (87 aa)
 
          0.434
Psed_2215
Hypothetical protein (90 aa)
 
          0.419
Psed_6569
Sulfate-transporting ATPase (345 aa)
   
   
  0.417
Psed_6400
Sulfate-transporting ATPase (287 aa)
   
   
  0.417
Psed_4816
Sulfate-transporting ATPase (317 aa)
   
   
  0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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