STRINGSTRING
Psed_3222 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3222" - Amidohydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3222Amidohydrolase (412 aa)    
Predicted Functional Partners:
Psed_3221
Phenylacetone monooxygenase (604 aa)
 
          0.878
Psed_2478
Amidohydrolase (395 aa)
 
          0.766
Psed_6317
Amidohydrolase (519 aa)
 
          0.755
Psed_2581
Amidohydrolase (380 aa)
 
          0.748
Psed_2172
Haloacid dehalogenase (208 aa)
   
          0.739
Psed_2148
Haloacid dehalogenase (243 aa)
   
          0.706
Psed_2592
Hypothetical protein (62 aa)
 
          0.678
Psed_3560
Carboxymuconolactone decarboxylase (163 aa)
   
          0.650
Psed_3738
Hypothetical protein (153 aa)
 
          0.639
Psed_4983
Aminocarboxymuconate-semialdehyde decarboxylase (330 aa)
 
          0.615
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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