STRINGSTRING
Psed_3226 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3226" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3226TetR family transcriptional regulator (205 aa)    
Predicted Functional Partners:
Psed_2673
TetR family transcriptional regulator (231 aa)
   
          0.754
Psed_5283
TetR family transcriptional regulator (202 aa)
   
          0.734
Psed_3227
TetR family transcriptional regulator (207 aa)
 
       
0.698
Psed_6159
TetR family transcriptional regulator (194 aa)
   
        0.614
Psed_2615
TetR family transcriptional regulator (186 aa)
   
          0.533
Psed_1597
TetR family transcriptional regulator (208 aa)
   
          0.518
Psed_3228
GntR family transcriptional regulator (253 aa)
              0.472
Psed_3225
Major facilitator superfamily protein (495 aa)
              0.464
Psed_1182
acyl-CoA dehydrogenase (393 aa)
   
        0.429
Psed_1079
TetR family transcriptional regulator (205 aa)
   
          0.411
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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