STRINGSTRING
Psed_3228 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3228" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3228GntR family transcriptional regulator (253 aa)    
Predicted Functional Partners:
Psed_1038
GntR family transcriptional regulator (238 aa)
   
          0.778
Psed_3919
GntR family transcriptional regulator (232 aa)
   
          0.777
Psed_1053
GntR family transcriptional regulator (222 aa)
   
          0.777
Psed_1543
GntR family transcriptional regulator (259 aa)
   
   
  0.640
Psed_2548
GntR family transcriptional regulator (246 aa)
   
   
  0.633
Psed_4913
GntR family transcriptional regulator (255 aa)
   
   
  0.611
Psed_3227
TetR family transcriptional regulator (207 aa)
              0.598
Psed_3232
5-oxoprolinase (697 aa)
              0.583
Psed_3233
Hydantoinase B/oxoprolinase (607 aa)
              0.577
Psed_3235
Dihydroxy-acid dehydratase (581 aa)
              0.555
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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