STRINGSTRING
Psed_3240 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3240" - ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3240ABC transporter substrate-binding protein (474 aa)    
Predicted Functional Partners:
Psed_3239
Regulatory protein ArsR (116 aa)
              0.721
Psed_3241
Amidase (509 aa)
 
          0.666
Psed_2599
ABC transporter substrate-binding protein (402 aa)
 
          0.620
Psed_3242
Nitrile hydratase (227 aa)
              0.617
Psed_3244
Nitrile hydratase b-subunit (135 aa)
              0.601
Psed_3243
Nitrile hydratase subunit alpha (202 aa)
              0.601
Psed_0512
ABC transporter permease (338 aa)
   
          0.582
Psed_3802
Regulatory protein MarR (142 aa)
   
          0.554
Psed_4879
MarR family transcriptional regulator (159 aa)
 
          0.541
Psed_2483
ABC transporter substrate-binding protein (410 aa)
   
          0.488
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]